systems biology

learn_bAIome offers workshops and trainings in biomedical AI/data science with tailored formats that take into account background, programming skills and intensity to provide unique, focused, and effective courses. These courses are free and open to students, clinicians, and researchers across academic institutions in Hamburg.

Prerequisites: Intermediate level computational background and basic knowledge of machine learning

Description: This 3-day international workshop is organised by University of Hamburg’s European University Alliance for Global Health (EUGLOH), Hub of Computing and Data Science (HCDS) and Center for Biomedical AI at UKE (bAIome) to foster international exchange and cooperation among students and researchers working in machine learning relating to biomedical questions. The vision is to create a supportive network and inspire international collaborations.

The workshop will explore various aspects of machine learning using biomedical data with the hands-on practical projects providing the main focus, allowing participants to work in a team environment to understand how machine learning is applied to specific biomedical challenges.

For further details and registration check out the EUGLOH website

learn_bAIome offers workshops and trainings in biomedical AI/data science with tailored formats that take into account background, programming skills and intensity to provide unique, focused, and effective courses. These courses are free and open to students, clinicians, and researchers across academic institutions in Hamburg.

This workshop is open to students, researchers, and clinicians wanting to learn how machine learning is applied for biomedical datasets, the different classes of machine learning algorithms that may be used, as well as the best practices in selecting and evaluating algorithms, and their limitations.  The aim of the course is to provide concepts and tools to navigate the use of machine learning in the biomedical landscape. The course will use biological datasets and there will be hands-on components as well as discussions. Participants should already have taken an introduction to machine learning and be familiar with Python programming. The workshop will be in presence and therefore each participant should bring their own laptop (no ipads).

Topics

• Taxonomy of machine learning algorithms
• Linear regression, logistic regression and related methods
• Decision trees
• Support Vector Machines
• Bias & Variance, curse of dimensionality
• Representation learning
• Neural networks and deep learning: MLPs, transformers, CNNs
• Applications to RNAseq and imaging data

Whether you have a background in computer science, or biomedical-related fields, this Mini Symposium is designed to be very inclusive for students, researchers, and clinicians working and/or interested in biomedical AI. Our invited speakers will provide engaging presentations that introduce core ideas in AI and demonstrate how they are being applied to solve challenges in biomedicine. There will be opportunities for short lightning talks, Q&A, and networking, all in a fun and relaxed atmosphere with drinks and snacks provided. Please register for this event here.

Invited speakers Fabian Kern (UHH) and Fatemeh Haedaghi (UKE) will give talks on new developments in their research. See titles and abstracts here.

Lightning talks: Interested in giving a short talk about your current research? Let us know in your registration. There will be a number of short talks from selected topics to give exciting impulses of cutting-edge research as well as plenty of time and encouragement of audience participation.

Topics of interest:

• Application of AI in diagnostics (omics, pathology, radiology)
• Predictive modeling for patient outcomes
• Drug discovery and personalized medicine
• Foundation models in biomedicine
• Federated learning and data privacy in biomedicine
• Explainable AI and model interpretability